YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YQJA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLTQLLQA LWAQDFETLA NPSMIGMLYF VLFVILFLEN GLLPAAFLPG DSLLVLVGVL  60
   61 IAKGAMGYPQ TILLLTVAAS LGCWVSYIQG RWLGNTRTVQ NWLSHLPAHY HQRAHHLFHK 120
  121 HGLSALLIGR FIAFVRTLLP TIAGLSGLNN ARFQFFNWMS GLLWVLILTT LGYMLGKTPV 180
  181 FLKYEDQLMS CLMLLPVVLL VFGLAGSLVV LWKKKYGNRG

Type	Start	End	Confidence
Cytoplasmic	1	17	0.81
Transmembrane Helix	18	38	0.86
Non-Cytoplasmic	39	42	0.59
Transmembrane Helix	43	62	0.76
Cytoplasmic	63	70	0.52
Transmembrane Helix	71	93	0.83
Non-Cytoplasmic	94	120	0.67
Transmembrane Helix	121	145	0.71
Cytoplasmic	146	154	0.65
Transmembrane Helix	155	176	0.90
Non-Cytoplasmic	177	190	0.68
Transmembrane Helix	191	212	0.94
Cytoplasmic	213	220	0.75