YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YPDA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHEIFNMLLA VFDRAALMLI CLFFLIRIRL FRELLHKSAH SPKELLAVTA IFSLFALFST  60
   61 WSGVPVEGSL VNVRIIAVMS GGILFGPWVG IITGVIAGIH RYLIDIGGVT AIPCFITSIL 120
  121 AGCISGWINL KIPKAQRWRV GILGGMLCET LTMILVIVWA PTTALGIDIV SKIGIPMILG 180
  181 SVCIGFIVLL VQSVEGEKEA SAARQAKLAL DIANKTLPLF RHVNSESLRK VCEIIRDDIH 240
  241 ADAVAITNTD HVLAYVGVGE HNYQNGDDFI SPTTRQAMNY GKIIIKNNDE AHRTPEIHSM 300
  301 LVIPLWEKGV VTGTLKIYYC HAHQITSSLQ EMAVGLSQII STQLEVSRAE QLREMANKAE 360
  361 LRALQSKINP HFLFNALNAI SSSIRLNPDT ARQLIFNLSR YLRYNIELKD DEQIDIKKEL 420
  421 YQIKDYIAIE QARFGDKLTV IYDIDEEVNC CIPSLLIQPL VENAIVHGIQ PCKGKGVVTI 480
  481 SVAECGNRVR IAVRDTGHGI DPKVIERVEA NEMPGNKIGL LNVHHRVKLL YGEGLHIRRL 540
  541 EPGTEIAFYI PNQRTPVASQ ATLLL

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.42
Transmembrane Helix	10	31	0.88
Cytoplasmic	32	44	0.47
Transmembrane Helix	45	65	0.90
Non-Cytoplasmic	66	74	0.40
Transmembrane Helix	75	99	0.85
Cytoplasmic	100	105	0.37
Transmembrane Helix	106	130	0.86
Non-Cytoplasmic	131	139	0.41
Transmembrane Helix	140	162	0.90
Cytoplasmic	163	168	0.41
Transmembrane Helix	169	191	0.86
Non-Cytoplasmic	192	565	0.50