YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YNJF_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDRHLHPRI KPLLHQCVRV LDKPGITPDG LTLVGFAIGV LALPFLALGW YLAALVVILL  60
   61 NRLLDGLDGA LARRRELTDA GGFLDISLDF LFYALVPFGF ILAAPEQNAL AGGWLLFAFI 120
  121 GTGSSFLAFA ALAAKHQIDN PGYAHKSFYY LGGLTEGTET ILLFVLGCLF PAWFAWFAWI 180
  181 FGALCWMTTF TRVWSGYLTL KSLQRQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.74
Transmembrane Helix	34	60	0.83
Cytoplasmic	61	80	0.81
Transmembrane Helix	81	104	0.88
Non-Cytoplasmic	105	110	0.83
Transmembrane Helix	111	133	0.91
Cytoplasmic	134	147	0.83
Transmembrane Helix	148	169	0.86
Non-Cytoplasmic	170	174	0.66
Transmembrane Helix	175	196	0.87
Cytoplasmic	197	206	0.87