YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GNGF_NOSS1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIGFLRQAL NALQQQSRSR TSHRVNQWFK WLSPGLSIKR WLLISVGGVL LAILGLAIWV  60
   61 KLTPIFWLLE LVRGFLGAVA NILPNYISGP LVILGGLLLL LWGQTRTVGS ITQVLRPGAE 120
  121 EELIDVLLAH RRLYRGPKIV VIGGGTGLST LLRGLKTYSA NITAIVTVAD DGGSSGRLRQ 180
  181 EFGVLPPGDI RNCLAALADE EKLLTELFQY RFRAGDGLTG HSFGNLFLTA MSDITGDLER 240
  241 AVAASSKVLA VRGQVLPATL SDVRLWAELA DGRRIEGESS IPKAGGKIVK IGCIPANPPA 300
  301 LPAAIKAIKE ADYIIIGPGS LYTSLIPNLL VSDIADAIAQ SQAPRIYVCN VMTQPGETQG 360
  361 YTVADHIRAI DAACGERQLF DAVLVHKKSP SAQSLIRYAQ QDSHPVFLDR EAVSQLGRRI 420
  421 VLANVLYEDK TGFVRHNPQK LAKVLLKWYG GAHHGK

Type	Start	End	Confidence
Cytoplasmic	1	40	0.87
Transmembrane Helix	41	60	0.96
Non-Cytoplasmic	61	81	0.75
Transmembrane Helix	82	103	0.89
Cytoplasmic	104	138	0.82
Transmembrane Helix	139	155	0.36
Non-Cytoplasmic	156	456	0.53