YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YLID_ECOLI, GSID...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLFNWRRQA VLNAMPLVKP DQVRTPWHEF WRRFRRQHMA MTAALFVILL IVVAIFARWI  60
   61 APYDAENYFD YDNLNNGPSL QHWFGVDSLG RDIFSRVLVG AQISLAAGVF AVFIGAAIGT 120
  121 LLGLLAGYYE GWWDRLIMRI CDVLFAFPGI LLAIAVVAVL GSGIANVIIA VAIFSIPAFA 180
  181 RLVRGNTLVL KQQTFIESAR SIGASDMTVL LRHILPGTVS SIVVFFTMRI GTSIISAASL 240
  241 SFLGLGAQPP TPEWGAMLNE ARADMVIAPH VAVFPALAIF LTVLAFNLLG DGLRDALDPK 300
  301 IKG

Type	Start	End	Confidence
Cytoplasmic	1	39	0.97
Transmembrane Helix	40	61	0.94
Non-Cytoplasmic	62	102	0.96
Transmembrane Helix	103	128	0.87
Cytoplasmic	129	135	0.88
Transmembrane Helix	136	159	0.82
Non-Cytoplasmic	160	163	0.62
Transmembrane Helix	164	183	0.86
Cytoplasmic	184	221	0.75
Transmembrane Helix	222	247	0.76
Non-Cytoplasmic	248	265	0.82
Transmembrane Helix	266	290	0.87
Cytoplasmic	291	303	0.82