YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YJIN_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLIELRRA KRLALSLLLI AAATFVVTLF LPPNFWVSGV KAIAEAAMVG ALADWFAVVA  60
   61 LFRRVPIPII SRHTAIIPRN KDRIGENLGQ FVQEKFLDTQ SLVALIRRHE PALLIGNWFS 120
  121 QPENARRVGQ HLLQIMSGFL ELTDDARIQR LLKRAVHRAI DKVDLSGTSA LMLESMTKND 180
  181 RHQVLLDTLI AQLIALLQRD KSRKFIAQQI VRWLESEHPL KAKILPTEWL GEHSAELVSD 240
  241 AVNSLLDDIS RDRAHQIRHA FDRATFALID KLKNDPEMAA RADAVKSYLK EDEAFNRYLS 300
  301 ELWGDLREWL KVDINSEDSR VKERIARAGQ WFGETLIADD ALRASLNGHL EQAAHRVAPE 360
  361 FSAFLTRHIS DTVKSWDARD MSRQIELNIG KDLQFIRVNG TLVGGCIGLI LYLLSQLPAL 420
  421 FPLGNF

Type	Start	End	Confidence
Cytoplasmic	1	12	0.92
Transmembrane Helix	13	32	0.91
Non-Cytoplasmic	33	41	0.74
Transmembrane Helix	42	62	0.89
Cytoplasmic	63	394	0.96
Transmembrane Helix	395	416	0.85
Non-Cytoplasmic	417	426	0.77