YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YJHB_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.89
Transmembrane Helix	20	40	0.95
Non-Cytoplasmic	41	49	0.80
Transmembrane Helix	50	73	0.86
Cytoplasmic	74	81	0.87
Transmembrane Helix	82	101	0.91
Non-Cytoplasmic	102	107	0.56
Transmembrane Helix	108	129	0.81
Cytoplasmic	130	139	0.83
Transmembrane Helix	140	159	0.91
Non-Cytoplasmic	160	165	0.82
Transmembrane Helix	166	185	0.92
Cytoplasmic	186	213	0.94
Transmembrane Helix	214	235	0.90
Non-Cytoplasmic	236	250	0.90
Transmembrane Helix	251	274	0.91
Cytoplasmic	275	282	0.86
Transmembrane Helix	283	301	0.97
Non-Cytoplasmic	302	307	0.77
Transmembrane Helix	308	332	0.87
Cytoplasmic	333	343	0.84
Transmembrane Helix	344	365	0.89
Non-Cytoplasmic	366	371	0.71
Transmembrane Helix	372	392	0.93
Cytoplasmic	393	405	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAWYKQVN PPQRKALFSA WLGYVFDGFD FMMIFYILHI IKADLGITDI QATLIGTVAF  60
   61 IARPIGGGFF GAMADKYGRK PMMMWAIFIY SVGTGLSGIA TNLYMLAVCR FIVGLGMSGE 120
  121 YACASTYAVE SWPKNLQSKA SAFLVSGFSV GNIIAAQIIP QFAEVYGWRN SFFIGLLPVL 180
  181 LVLWIRKSAP ESQEWIEDKY KDKSTFLSVF RKPHLSISMI VFLVCFCLFG ANWPINGLLP 240
  241 SYLADNGVNT VVISTLMTIA GLGTLTGTIF FGFVGDKIGV KKAFVVGLIT SFIFLCPLFF 300
  301 ISVKNSSLIG LCLFGLMFTN LGIAGLVPKF IYDYFPTKLR GLGTGLIYNL GATGGMAAPV 360
  361 LATYISGYYG LGVSLFIVTV AFSALLILLV GFDIPGKIYK LSVAK