YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YJGQ_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPFGVLDRY IGKTIFTTIM MTLFMLVSLS GIIKFVDQLK KAGQGSYDAL GAGMYTLLSV  60
   61 PKDVQIFFPM AALLGALLGL GMLAQRSELV VMQASGFTRM QVALSVMKTA IPLVLLTMAI 120
  121 GEWVAPQGEQ MARNYRAQAM YGGSLLSTQQ GLWAKDGNNF VYIERVKGDE ELGGISIYAF 180
  181 NENRRLQSVR YAATAKFDPE HKVWRLSQVD ESDLTNPKQI TGSQTVSGTW KTNLTPDKLG 240
  241 VVALDPDALS ISGLHNYVKY LKSSGQDAGR YQLNMWSKIF QPLSVAVMML MALSFIFGPL 300
  301 RSVPMGVRVV TGISFGFVFY VLDQIFGPLT LVYGIPPIIG ALLPSASFFL ISLWLLMRKS 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	13	0.77
Transmembrane Helix	14	33	0.93
Non-Cytoplasmic	34	63	0.83
Transmembrane Helix	64	84	0.93
Cytoplasmic	85	103	0.82
Transmembrane Helix	104	125	0.86
Non-Cytoplasmic	126	278	0.90
Transmembrane Helix	279	298	0.93
Cytoplasmic	299	305	0.72
Transmembrane Helix	306	326	0.84
Non-Cytoplasmic	327	334	0.71
Transmembrane Helix	335	356	0.93
Cytoplasmic	357	360	0.85