YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YJDB_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKRLLKRPS LNLLAWLLLA AFYISICLNI AFFKQVLQAL PLDSLHNVLV FLSMPVVAFS  60
   61 VINIVLTLSS FLWLNRPLAC LFILVGAAAQ YFIMTYGIVI DRSMIANIID TTPAESYALM 120
  121 TPQMLLTLGF SGVLAALIAC WIKIKPATSR LRSVLFRGAN ILVSVLLILL VAALFYKDYA 180
  181 SLFRNNKELV KSLSPSNSIV ASWSWYSHQR LANLPLVRIG EDAHRNPLMQ NEKRKNLTIL 240
  241 IVGETSRAEN FSLNGYPRET NPRLAKDNVV YFPNTASCGT ATAVSVPCMF SDMPREHYKE 300
  301 ELAQHQEGVL DIIQRAGINV LWNDNDGGCK GACDRVPHQN VTALNLPDQC INGECYDEVL 360
  361 FHGLEEYINN LQGDGVIVLH TIGSHGPTYY NRYPPQFRKF TPTCDTNEIQ TCTKEQLVNT 420
  421 YDNTLVYVDY IVDKAINLLK EHQDKFTTSL VYLSDHGESL GENGIYLHGL PYAIAPDSQK 480
  481 QVPMLLWLSE DYQKRYQVDQ NCLQKQAQTQ HYSQDNLFST LLGLTGVETK YYQAADDILQ 540
  541 TCRRVSE

Type	Start	End	Confidence
Cytoplasmic	1	11	0.95
Transmembrane Helix	12	33	0.94
Non-Cytoplasmic	34	47	0.87
Transmembrane Helix	48	68	0.91
Cytoplasmic	69	77	0.68
Transmembrane Helix	78	100	0.89
Non-Cytoplasmic	101	120	0.94
Transmembrane Helix	121	142	0.91
Cytoplasmic	143	153	0.88
Transmembrane Helix	154	176	0.92
Non-Cytoplasmic	177	547	0.99