YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YJCD_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.94
Transmembrane Helix	29	50	0.89
Non-Cytoplasmic	51	56	0.72
Transmembrane Helix	57	78	0.89
Cytoplasmic	79	82	0.71
Transmembrane Helix	83	102	0.91
Non-Cytoplasmic	103	109	0.64
Transmembrane Helix	110	133	0.87
Cytoplasmic	134	140	0.86
Transmembrane Helix	141	165	0.85
Non-Cytoplasmic	166	174	0.87
Transmembrane Helix	175	197	0.89
Cytoplasmic	198	203	0.87
Transmembrane Helix	204	225	0.89
Non-Cytoplasmic	226	250	0.91
Transmembrane Helix	251	274	0.78
Cytoplasmic	275	302	0.84
Transmembrane Helix	303	321	0.77
Non-Cytoplasmic	322	332	0.52
Transmembrane Helix	333	353	0.86
Cytoplasmic	354	355	0.53
Transmembrane Helix	356	380	0.71
Non-Cytoplasmic	381	391	0.76
Transmembrane Helix	392	417	0.89
Cytoplasmic	418	427	0.80
Transmembrane Helix	428	447	0.95
Non-Cytoplasmic	448	449	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPSARTGG SLDAWFKISQ RGSTVRQEVV AGLTTFLAMV YSVIVVPGML GKAGFPPAAV  60
   61 FVATCLVAGL GSIVMGLWAN LPLAIGCAIS LTAFTAFSLV LGQHISVPVA LGAVFLMGVL 120
  121 FTVISATGIR SWILRNLPHG VAHGTGIGIG LFLLLIAANG VGLVIKNPLD GLPVALGDFA 180
  181 TFPVIMSLVG LAVIIGLEKL KVPGGILLTI IGISIVGLIF DPNVHFSGVF AMPSLSDENG 240
  241 NSLIGSLDIM GALNPVVLPS VLALVMTAVF DATGTIRAVA GQANLLDKDG QIIDGGKALT 300
  301 TDSMSSVFSG LVGAAPAAVY IESAAGTAAG GKTGLTAITV GVLFLLILFL SPLSYLVPGY 360
  361 ATAPALMYVG LLMLSNVAKI DFADFVDAMA GLVTAVFIVL TCNIVTGIMI GFATLVIGRL 420
  421 VSGEWRKLNI GTVVIAVALV TFYAGGWAI