YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIJE_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.92
Transmembrane Helix	9	28	0.94
Non-Cytoplasmic	29	40	0.74
Transmembrane Helix	41	59	0.97
Cytoplasmic	60	70	0.81
Transmembrane Helix	71	92	0.93
Non-Cytoplasmic	93	98	0.85
Transmembrane Helix	99	119	0.93
Cytoplasmic	120	126	0.87
Transmembrane Helix	127	146	0.94
Non-Cytoplasmic	147	153	0.85
Transmembrane Helix	154	175	0.91
Cytoplasmic	176	185	0.86
Transmembrane Helix	186	206	0.92
Non-Cytoplasmic	207	215	0.85
Transmembrane Helix	216	238	0.91
Cytoplasmic	239	245	0.81
Transmembrane Helix	246	265	0.96
Non-Cytoplasmic	266	270	0.83
Transmembrane Helix	271	289	0.94
Cytoplasmic	290	301	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAAGKSNPL AISGLVVLTL IWSYSWIFMK QVTSYIGAFD FTALRCIFGA LVLFIVLLLR  60
   61 GRGMRPTPFK YTLAIALLQT CGMVGLAQWA LVSGGAGKVA ILSYTMPFWV VIFAALFLGE 120
  121 RLRRGQYFAI LIAAFGLFLV LQPWQLDFSS MKSAMLAILS GVSWGASAIV AKRLYARHPR 180
  181 VDLLSLTSWQ MLYAALVMSV VALLVPQREI DWQPTVFWAL AYSAILATAL AWSLWLFVLK 240
  241 NLPASIASLS TLAVPVCGVL FSWWLLGENP GAVEGSGIVL IVLALALVSR KKKEAVSVKR 300
  301 I