YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIID_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLPGLSRE TRESIAMYHL RVPQTEEELE RYYQFRWEML RKPLHQPKGS ERDAWDAMAH  60
   61 HQMVVDEQGN LVAVGRLYIN ADNEASIRFM AVHPDVQDKG LGTLMAMTLE SVARQEGVKR 120
  121 VTCSAREDAV EFFAKLGFVN QGEITTPTTT PIRHFLMIKP VATLDDILHR GDWCAQLQQA 180
  181 WYEHIPLSEK MGVRIQQYTG QKFITTMPET GNQNPHHTLF AGSLFSLATL TGWGLIWLML 240
  241 RERHLGGTII LADAHIRYSK PISGKPHAVA DLGALSGDLD RLARGRKARV QMQVEIFGDE 300
  301 TPGAVFEGTY IVLPAKPFGP YEEGGNEEE

Type	Start	End	Confidence
Non-Cytoplasmic	1	216	0.92
Transmembrane Helix	217	240	0.85
Cytoplasmic	241	329	0.88