YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIEG_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.96
Transmembrane Helix	27	48	0.86
Non-Cytoplasmic	49	59	0.62
Transmembrane Helix	60	81	0.86
Cytoplasmic	82	85	0.64
Transmembrane Helix	86	108	0.84
Non-Cytoplasmic	109	114	0.71
Transmembrane Helix	115	135	0.90
Cytoplasmic	136	141	0.90
Transmembrane Helix	142	164	0.85
Non-Cytoplasmic	165	176	0.78
Transmembrane Helix	177	198	0.88
Cytoplasmic	199	204	0.76
Transmembrane Helix	205	225	0.89
Non-Cytoplasmic	226	244	0.86
Transmembrane Helix	245	266	0.83
Cytoplasmic	267	294	0.88
Transmembrane Helix	295	317	0.89
Non-Cytoplasmic	318	324	0.86
Transmembrane Helix	325	346	0.89
Cytoplasmic	347	354	0.66
Transmembrane Helix	355	374	0.91
Non-Cytoplasmic	375	387	0.79
Transmembrane Helix	388	413	0.85
Cytoplasmic	414	423	0.77
Transmembrane Helix	424	442	0.95
Non-Cytoplasmic	443	445	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHQHTTQTS GQGMLERVFK LREHGTTART EVIAGFTTFL TMVYIVFVNP QILGVAGMDT  60
   61 SAVFVTTCLI AAFGSIMMGL FANLPVALAP AMGLNAFFAF VVVQAMGLPW QVGMGAIFWG 120
  121 AIGLLLLTIF RVRYWMIANI PVSLRVGITS GIGLFIGMMG LKNAGVIVAN PETLVSIGNL 180
  181 TSHSVLLGIL GFFIIAILAS RNIHAAVLVS IVVTTLLGWM LGDVHYNGIV SAPPSVMTVV 240
  241 GHVDLAGSFN LGLAGVIFSF MLVNLFDSSG TLIGVTDKAG LADEKGKFPR MKQALYVDSI 300
  301 SSVTGSFIGT SSVTAYIESS SGVSVGGRTG LTAVVVGLLF LLVIFLSPLA GMVPGYAAAG 360
  361 ALIYVGVLMT SSLARVNWQD LTESVPAFIT AVMMPFSFSI TEGIALGFIS YCVMKIGTGR 420
  421 LRDLSPCVII VALLFILKIV FIDAH