YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YHJW_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYIKSITQQ KLSFLLAIYI GLFMNGAVFY RRFGSYAHDF TVWKGISAVV ELAATVLVTF  60
   61 FLLRLLSLFG RRSWRILASL VVLFSAGASY YMTFLNVVIG YGIIASVMTT DIDLSKEVVG 120
  121 LNFILWLIAV SALPLILIWN NRCRYTLLRQ LRTPGQRIRS LAVVVLAGIM VWAPIRLLDI 180
  181 QQKKVERATG VDLPSYGGVV ANSYLPSNWL SALGLYAWAR VDESSDNNSL LNPAKKFTYQ 240
  241 APQNVDDTYV VFIIGETTRW DHMGIFGYER NTTPKLAQEK NLAAFRGYSC DTATKLSLRC 300
  301 MFVRQGGAED NPQRTLKEQN IFAVLKQLGF SSDLYAMQSE MWFYSNTMAD NIAYREQIGA 360
  361 EPRNRGKPVD DMLLVDEMQQ SLGRNPDGKH LIILHTKGSH FNYTQRYPRS FAQWKPECIG 420
  421 VDSGCTKAQM INSYDNSVTY VDHFISSVID QVRDKKAIVF YAADHGESIN EREHLHGTPR 480
  481 ELAPPEQFRV PMMVWMSDKY LENPANAQAF AQLKKEADMK VPRRHVELYD TIMGCLGYTS 540
  541 PDGGINENNN WCHIPQAKEA AAN

Type	Start	End	Confidence
Cytoplasmic	1	11	0.94
Transmembrane Helix	12	31	0.94
Non-Cytoplasmic	32	44	0.79
Transmembrane Helix	45	66	0.90
Cytoplasmic	67	75	0.84
Transmembrane Helix	76	100	0.82
Non-Cytoplasmic	101	118	0.82
Transmembrane Helix	119	139	0.92
Cytoplasmic	140	157	0.88
Transmembrane Helix	158	175	0.95
Non-Cytoplasmic	176	563	0.98