YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YHJU_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQFTQNTAM PSSLWQYWRG LSGWNFYFLV KFGLLWAGYL NFHPLLNLVF AAFLLMPLPR  60
   61 YSLHRLRHWI ALPIGFALFW HDTWLPGPES IMSQGSQVAG FSTDYLIDLV TRFINWQMIG 120
  121 AIFVLLVAWL FLSQWIRITV FVVAILLWLN VLTLAGPSFS LWPAGQPTTT VTTTGGNAAA 180
  181 TVAATGGAPV VGDMPAQTAP PTTANLNAWL NNFYNAEAKR KSTFPSSLPA DAQPFELLVI 240
  241 NICSLSWSDI EAAGLMSHPL WSHFDIEFKN FNSATSYSGP AAIRLLRASC GQTSHTNLYQ 300
  301 PANNDCYLFD NLSKLGFTQH LMMGHNGQFG GFLKEVRENG GMQSELMDQT NLPVILLGFD 360
  361 GSPVYDDTAV LNRWLDVTEK DKNSRSATFY NTLPLHDGNH YPGVSKTADY KARAQKFFDE 420
  421 LDAFFTELEK SGRKVMVVVV PEHGGALKGD RMQVSGLRDI PSPSITDVPV GVKFFGMKAP 480
  481 HQGAPIVIEQ PSSFLAISDL VVRVLDGKIF TEDNVDWKKL TSGLPQTAPV SENSNAVVIQ 540
  541 YQDKPYVRLN GGDWVPYPQ

Type	Start	End	Confidence
Cytoplasmic	1	14	0.58
Transmembrane Helix	15	38	0.60
Non-Cytoplasmic	39	39	0.40
Transmembrane Helix	40	58	0.82
Cytoplasmic	59	65	0.77
Transmembrane Helix	66	85	0.88
Non-Cytoplasmic	86	112	0.91
Transmembrane Helix	113	132	0.94
Cytoplasmic	133	139	0.75
Transmembrane Helix	140	162	0.87
Non-Cytoplasmic	163	559	0.90