YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YHIN_ECOLI
Protein type:	Globular with Signal Peptide
Type Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERFDAIIIG AGAAGMFCSA LAGQAGRRVL LIDNGKKPGR KILMSGGGRC NFTNLYVEPG  60
   61 AYLSQNPHFC KSALARFTQW DFIDLVNKHG IAWHEKTLGQ LFCDDSAQQI VDMLVDECEK 120
  121 GNVTFRLRSE VLSVAKDETG FTLDLNGMTV GCEKLVIATG GLSMPGLGAS PFGYKIAEQF 180
  181 GLNVLPTRAG LVPFTLHKPL LEELQVLAGV AVPSVITAEN GTVFRENLLF THRGLSGPAV 240
  241 LQISSYWQPG EFVSINLLPD VDLETFLNEQ RNAHPNQSLK NTLAVHLPKR LVERLQQLGQ 300
  301 IPDVSLKQLN VRDQQALIST LTDWRVQPNG TEGYRTAEVT LGGVDTNELS SRTMEARKVP 360
  361 GLYFIGEVMD VTGWLGGYNF QWAWSSAWAC AQDLIAAKSS

Type	Start	End	Confidence
Signal Peptide	1	22	0.81
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	400	0.93