YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YHDH_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQALLLEQQD GKTLASVQTL DESRLPEGDV TVDVHWSSLN YKDALAITGK GKIIRNFPMI  60
   61 PGIDFAGTVR TSEDPRFHAG QEVLLTGWGV GENHWGGLAE QARVKGDWLV AMPQGLDARK 120
  121 AMIIGTAGFT AMLCVMALED AGVRPQDGEI VVTGASGGVG STAVALLHKL GYQVVAVSGR 180
  181 ESTHEYLKSL GASRVLPRDE FAESRPLEKQ VWAGAIDTVG DKVLAKVLAQ MNYGGCVAAC 240
  241 GLAGGFTLPT TVMPFILRNV RLQGVDSVMT PPERRAQAWQ RLVADLPESF YTQAAKEISL 300
  301 SEAPNFAEAI INNQIQGRTL VKVN

Type	Start	End	Confidence
Cytoplasmic	1	120	0.82
Transmembrane Helix	121	141	0.71
Non-Cytoplasmic	142	149	0.78
Transmembrane Helix	150	172	0.62
Cytoplasmic	173	232	0.71
Transmembrane Helix	233	253	0.65
Non-Cytoplasmic	254	324	0.75