YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YGDL_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVISDAWR QRFGGTARLY GEKALQLFAD AHICVVGIGG VGSWAAEALA RTGIGAITLI  60
   61 DMDDVCVTNT NRQIHALRDN VGLAKAEVMA ERIRQINPEC RVTVVDDFVT PDNVAQYMSV 120
  121 GYSYVIDAID SVRPKAALIA YCRRNKIPLV TTGGAGGQID PTQIQVTDLA KTIQDPLAAK 180
  181 LRERLKSDFG VVKNSKGKLG VDCVFSTEAL VYPQSDGTVC AMKATAEGPK RMDCASGFGA 240
  241 ATMVTATFGF VAVSHALKKM MAKAARQG

Type	Start	End	Confidence
Non-Cytoplasmic	1	236	0.74
Transmembrane Helix	237	257	0.77
Cytoplasmic	258	268	0.59