YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YGCS_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	43	0.91
Non-Cytoplasmic	44	53	0.84
Transmembrane Helix	54	77	0.91
Cytoplasmic	78	85	0.90
Transmembrane Helix	86	105	0.95
Non-Cytoplasmic	106	110	0.87
Transmembrane Helix	111	133	0.91
Cytoplasmic	134	142	0.91
Transmembrane Helix	143	166	0.91
Non-Cytoplasmic	167	172	0.91
Transmembrane Helix	173	194	0.92
Cytoplasmic	195	248	0.97
Transmembrane Helix	249	270	0.89
Non-Cytoplasmic	271	281	0.87
Transmembrane Helix	282	304	0.89
Cytoplasmic	305	311	0.79
Transmembrane Helix	312	331	0.93
Non-Cytoplasmic	332	337	0.69
Transmembrane Helix	338	358	0.91
Cytoplasmic	359	369	0.79
Transmembrane Helix	370	393	0.85
Non-Cytoplasmic	394	400	0.70
Transmembrane Helix	401	421	0.94
Cytoplasmic	422	445	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTSPVRMDD LPLNRFHCRI AALTFGAHLT DGYVLGVIGY AIIQLTPAMQ LTPFMAGMIG  60
   61 GSALLGLFLG SLVLGWISDH IGRQKIFTFS FLLITLASFL QFFATTPEHL IGLRILIGIG 120
  121 LGGDYSVGHT LLAEFSPRRH RGILLGAFSV VWTVGYVLAS IAGHHFISEN PEAWRWLLAS 180
  181 AALPALLITL LRWGTPESPR WLLRQGRFAE AHAIVHRYFG PHVLLGDEVV TATHKHIKTL 240
  241 FSSRYWRRTA FNSVFFVCLV IPWFVIYTWL PTIAQTIGLE DALTASLMLN ALLIVGALLG 300
  301 LVLTHLLAHR KFLLGSFLLL AATLVVMACL PSGSSLTLLL FVLFSTTISA VSNLVGILPA 360
  361 ESFPTDIRSL GVGFATAMSR LGAAVSTGLL PWVLAQWGMQ VTLLLLATVL LVGFVVTWLW 420
  421 APETKALPLV AAGNVGGANE HSVSV