YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YGAY_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.87
Transmembrane Helix	10	30	0.90
Non-Cytoplasmic	31	46	0.87
Transmembrane Helix	47	67	0.93
Cytoplasmic	68	77	0.81
Transmembrane Helix	78	96	0.94
Non-Cytoplasmic	97	102	0.62
Transmembrane Helix	103	126	0.87
Cytoplasmic	127	134	0.87
Transmembrane Helix	135	155	0.93
Non-Cytoplasmic	156	164	0.70
Transmembrane Helix	165	185	0.92
Cytoplasmic	186	216	0.96
Transmembrane Helix	217	240	0.88
Non-Cytoplasmic	241	247	0.82
Transmembrane Helix	248	268	0.91
Cytoplasmic	269	276	0.86
Transmembrane Helix	277	295	0.93
Non-Cytoplasmic	296	301	0.69
Transmembrane Helix	302	321	0.92
Cytoplasmic	322	336	0.84
Transmembrane Helix	337	357	0.90
Non-Cytoplasmic	358	363	0.70
Transmembrane Helix	364	384	0.93
Cytoplasmic	385	394	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKPNHELSP ALIVLMSIAT GLAVASNYYA QPLLDTIARN FSLSASSAGF IVTAAQLGYA  60
   61 AGLLFLVPLG DMFERRRLIV SMTLLAAGGM LITASSQSLA MMILGTALTG LFSVVAQILV 120
  121 PLAATLASPD KRGKVVGTIM SGLLLGILLA RTVAGLLANL GGWRTVFWVA SVLMALMALA 180
  181 LWRGLPQMKS ETHLNYPQLL GSVFSMFISD KILRTRALLG CLTFANFSIL WTSMAFLLAA 240
  241 PPFNYSDGVI GLFGLAGAAG ALGARPAGGF ADKGKSHHTT TFGLLLLLLS WLAIWFGHTS 300
  301 VLALIIGILV LDLTVQGVHI TNQTVIYRIH PDARNRLTAG YMTSYFIGGA AGSLISASAW 360
  361 QHGGWAGVCL AGATIALVNL LVWWRGFHRQ EAAN