YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YFJV_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.63
Transmembrane Helix	17	40	0.80
Cytoplasmic	41	45	0.46
Transmembrane Helix	46	69	0.68
Non-Cytoplasmic	70	84	0.66
Transmembrane Helix	85	107	0.87
Cytoplasmic	108	129	0.88
Transmembrane Helix	130	150	0.91
Non-Cytoplasmic	151	154	0.83
Transmembrane Helix	155	172	0.95
Cytoplasmic	173	185	0.78
Transmembrane Helix	186	205	0.91
Non-Cytoplasmic	206	224	0.83
Transmembrane Helix	225	244	0.83
Cytoplasmic	245	279	0.56
Transmembrane Helix	280	299	0.63
Non-Cytoplasmic	300	309	0.39
Transmembrane Helix	310	334	0.86
Cytoplasmic	335	338	0.36

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RALFTWKVLL GAAVDALFAN DGAALILTPI VIAMLIALGF SQGTTLAFVM AAGFIADTAS  60
   61 LPLIVSNLVN IVSADFFGLS FAQYASVMIS VDAAAIAATL IMLYLFFRRV IPATYXVSLL 120
  121 KTPASAIKDL ATFRAGWIVL LLLLVGFFFL EPQGILVSAI AAAGAAVLFV VAKRGHSINT 180
  181 GKVLRGAPWQ IVIFSLGMYI VVYGLRNAGF TEYLSGVLNL LADKGLWAAT FGTGFLTAFL 240
  241 SSVMNNMPTV LIGALSIDGS TATGVVKEAM IYANVIGCDL GPKITPIGSL ATLLWLHVLA 300
  301 QKNMTITWGY YFRTGIVMTV PVLFVTLAAL AWRLSVTL