YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YFIK_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPTLLSAFW TYTLITAMTP GPNNILALSS ATSHGFRQST RVLAGMSLGF LIVMLLCAGI  60
   61 SFSLAVIDPA AVHLLSWAGA AYIVWLAWKI ATSPTKEDGL QAKPISFWAS FALQFVNVKI 120
  121 ILYGVTALST FVLPQTQALS WVVGVSVLLA MIGTFGNVCW ALAGHLFQRL FRQYGRQLNI 180
  181 VLALLLVYCA VRIFY

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.76
Transmembrane Helix	8	28	0.75
Cytoplasmic	29	41	0.83
Transmembrane Helix	42	64	0.91
Non-Cytoplasmic	65	69	0.75
Transmembrane Helix	70	92	0.85
Cytoplasmic	93	106	0.89
Transmembrane Helix	107	127	0.86
Non-Cytoplasmic	128	140	0.69
Transmembrane Helix	141	163	0.90
Cytoplasmic	164	174	0.83
Transmembrane Helix	175	194	0.84
Non-Cytoplasmic	195	195	0.90