YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YFDI_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKAIKVSLY ISFVLIICAL SKNIMMLNTS DFGRAIKPLI EDIPAFTYDL PLLYKLKGHI  60
   61 DSIDSYEYIS SYSYILYTYV LFISIFTEYL DARVLSLFLK VIYIYSLYAI FTSYIKTERY 120
  121 VTLFTFFILA FLMCSSSTLS MFASFYQEQI VIIFLPFLVY SLTCKNNKSM LLLFFSLLII 180
  181 STAKNQFILT PLIVYSYYIF FDRHKLIIKS VICVVCLLAS IFAISYSKGV VELNKYHATY 240
  241 FGSYLYMKNN GYKMPSYVDD KCVGLDAWGN KFDISFGATP TEVGTECFES HKDETFSNAL 300
  301 FLLVSKPSTI FKLPFDDGVM SQYKENYFHV YKKLHVIYGE SNILTTITNI KDNIFKNIRF 360
  361 ISLLLFFIAS IFIRNNKIKA SLFVVSLFGI SQFYVSFFGE GYRDLSKHLF GMYFSFDLCL 420
  421 YITVVFLIYK IIQRNQDNSD VKH

Type	Start	End	Confidence
Cytoplasmic	1	6	0.85
Transmembrane Helix	7	26	0.86
Non-Cytoplasmic	27	74	0.79
Transmembrane Helix	75	109	0.60
Cytoplasmic	110	119	0.62
Transmembrane Helix	120	142	0.87
Non-Cytoplasmic	143	144	0.57
Transmembrane Helix	145	164	0.68
Cytoplasmic	165	170	0.75
Transmembrane Helix	171	194	0.80
Non-Cytoplasmic	195	205	0.74
Transmembrane Helix	206	226	0.94
Cytoplasmic	227	379	0.82
Transmembrane Helix	380	398	0.90
Non-Cytoplasmic	399	408	0.47
Transmembrane Helix	409	432	0.86
Cytoplasmic	433	443	0.56