YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARNT_ECOLI, YFBI...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.79
Transmembrane Helix	7	28	0.88
Non-Cytoplasmic	29	80	0.89
Transmembrane Helix	81	103	0.91
Cytoplasmic	104	110	0.90
Transmembrane Helix	111	130	0.90
Non-Cytoplasmic	131	136	0.59
Transmembrane Helix	137	155	0.70
Cytoplasmic	156	163	0.53
Transmembrane Helix	164	189	0.80
Non-Cytoplasmic	190	204	0.50
Transmembrane Helix	205	226	0.95
Cytoplasmic	227	256	0.48
Transmembrane Helix	257	280	0.86
Non-Cytoplasmic	281	288	0.41
Transmembrane Helix	289	308	0.87
Cytoplasmic	309	313	0.38
Transmembrane Helix	314	334	0.93
Non-Cytoplasmic	335	343	0.38
Transmembrane Helix	344	367	0.85
Cytoplasmic	368	378	0.37
Transmembrane Helix	379	400	0.87
Non-Cytoplasmic	401	405	0.40
Transmembrane Helix	406	426	0.88
Cytoplasmic	427	550	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSVRYLIGL FAFIACYYLL PISTRLLWQP DETRYAEISR EMLASGDWIV PHLLGLRYFE  60
   61 KPIAGYWINS IGQWLFGANN FGVRAGVIFA TLLTAALVTW FTLRLWRDKR LALLATVIYL 120
  121 SLFIVYAIGT YAVLDPFIAF WLVAGMCSFW LAMQAQTWKG KSAGFLLLGI TCGMGVMTKG 180
  181 FLALAVPVLS VLPWVATQKR WKDLFIYGWL AVISCVLTVL PWGLAIAQRE PNFWHYFFWV 240
  241 EHIQRFALDD AQHRAPFWYY VPVIIAGSLP WLGLLPGALY TGWKNRKHSA TVYLLSWTIM 300
  301 PLLFFSVAKG KLPTYILSCF ASLAMLMAHY ALLAAKNNPL ALRINGWINI AFGVTGIIAT 360
  361 FVVSPWGPMN TPVWQTFESY KVFCAWSIFS LWAFFGWYTL TNVEKTWPFA ALCPLGLALL 420
  421 VGFSIPDRVM EGKHPQFFVE MTQESLQPSR YILTDSVGVA AGLAWSLQRD DIIMYRQTGE 480
  481 LKYGLNYPDA KGRFVSGDEF ANWLNQHRQE GIITLVLSVD RDEDINSLAI PPADAIDRQE 540
  541 RLVLIQYRPK