YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YEAV_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.95
Transmembrane Helix	31	53	0.91
Non-Cytoplasmic	54	82	0.96
Transmembrane Helix	83	106	0.87
Cytoplasmic	107	135	0.93
Transmembrane Helix	136	157	0.92
Non-Cytoplasmic	158	171	0.88
Transmembrane Helix	172	193	0.93
Cytoplasmic	194	203	0.83
Transmembrane Helix	204	224	0.90
Non-Cytoplasmic	225	260	0.87
Transmembrane Helix	261	280	0.93
Cytoplasmic	281	288	0.91
Transmembrane Helix	289	308	0.94
Non-Cytoplasmic	309	348	0.91
Transmembrane Helix	349	370	0.93
Cytoplasmic	371	389	0.91
Transmembrane Helix	390	410	0.94
Non-Cytoplasmic	411	417	0.77
Transmembrane Helix	418	437	0.92
Cytoplasmic	438	481	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLLAMGLVI YLATSKYGNI RLGEGKPEYS TLSWLFMFIC AGLGSSTLYW GVAEWAYYYQ  60
   61 TPGLNIAPRS QQALEFSVPY SFFHWGISAW ATYTLASLIM AYHFHVRKNK GLSLSGIIAA 120
  121 ITGVRPQGPW GKLVDLMFLI ATVGALTISL VVTAATFTRG LSALTGLPDN FTVQAFVILL 180
  181 SGGIFCLSSW IGINNGLQRL SKMVGWGAFL LPLLVLIVGP TEFITNSIIN AIGLTTQNFL 240
  241 QMSLFTDPLG DGSFTRNWTV FYWLWWISYT PGVAMFVTRV SRGRKIKEVI WGLILGSTVG 300
  301 CWFFFGVMES YAIHQFINGV INVPQVLETL GGETAVQQVL MSLPAGKLFL AAYLGVMIIF 360
  361 LASHMDAVAY TMAATSTRNL QEGDDPDRGL RLFWCVVITL IPLSILFTGA SLETMKTTVV 420
  421 LTALPFLVIL LVKVGGFIRW LKQDYADIPA HQVEHYLPQT PVEALEKTPV LPAGTVFKGD 480
  481 N