YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YDHC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.98
Transmembrane Helix	7	29	0.91
Non-Cytoplasmic	30	39	0.82
Transmembrane Helix	40	62	0.91
Cytoplasmic	63	71	0.88
Transmembrane Helix	72	91	0.95
Non-Cytoplasmic	92	97	0.83
Transmembrane Helix	98	119	0.92
Cytoplasmic	120	130	0.83
Transmembrane Helix	131	151	0.93
Non-Cytoplasmic	152	160	0.65
Transmembrane Helix	161	180	0.96
Cytoplasmic	181	208	0.93
Transmembrane Helix	209	230	0.90
Non-Cytoplasmic	231	237	0.84
Transmembrane Helix	238	258	0.91
Cytoplasmic	259	269	0.82
Transmembrane Helix	270	291	0.93
Non-Cytoplasmic	292	298	0.78
Transmembrane Helix	299	318	0.96
Cytoplasmic	319	336	0.80
Transmembrane Helix	337	357	0.88
Non-Cytoplasmic	358	360	0.76
Transmembrane Helix	361	381	0.78
Cytoplasmic	382	403	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPGKRFLVW LAGLSVLGFL ATDMYLPAFA AIQADLQTPA SAVSASLSLF LAGFAAAQLL  60
   61 WGPLSDRYGR KPVLLIGLTI FALGSLGMLW VENAATLLVL RFVQAVGVCA AAVIWQALVT 120
  121 DYYPSQKVNR IFAAIMPLVG LSPALAPLLG SWLLVHFSWQ AIFATLFAIT VVLILPIFWL 180
  181 KPTTKARNNS QDGLTFTDLL RSKTYRGNVL IYAACSASFF AWLTGSPFIL SEMGYSPAVI 240
  241 GLSYVPQTIA FLIGGYGCRA ALQKWQGKQL LPWLLVLFAV SVIATWAAGF ISHVSLVEIL 300
  301 IPFCVMAIAN GAIYPIVVAQ ALRPFPHATG RAAALQNTLQ LGLCFLASLV VSWLISISTP 360
  361 LLTTTSVMLS TVVLVALGYM MQRCEEVGCQ NHGNAEVAHS ESH