YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YDEZ_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.86
Transmembrane Helix	7	25	0.94
Non-Cytoplasmic	26	33	0.72
Transmembrane Helix	34	56	0.87
Cytoplasmic	57	62	0.70
Transmembrane Helix	63	82	0.90
Non-Cytoplasmic	83	87	0.77
Transmembrane Helix	88	110	0.92
Cytoplasmic	111	119	0.76
Transmembrane Helix	120	140	0.94
Non-Cytoplasmic	141	159	0.87
Transmembrane Helix	160	181	0.94
Cytoplasmic	182	210	0.68
Transmembrane Helix	211	233	0.89
Non-Cytoplasmic	234	239	0.50
Transmembrane Helix	240	262	0.70
Cytoplasmic	263	263	0.38
Transmembrane Helix	264	282	0.76
Non-Cytoplasmic	283	291	0.64
Transmembrane Helix	292	312	0.89
Cytoplasmic	313	330	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIRYGWELA LAALLVIEIV AFGAINPRML DLNMLLFSTS DFICIGIVAL PLTMVIVSGG  60
   61 IDISFGSTIG LCAIALGVLF QSGVPMPLAI LLTLLLGALC GLINAGLIIY TKVNPLVITL 120
  121 GTLYLFAGSA LLLSGMAGAT GYEGIGGFPM AFTDFANLDV LGLPVPLIIF LICLLVFWLW 180
  181 LHKTHAGRNV FLIGQSPRVA LYSAIPVNRT LCALYAMTGL ASAVAAVLLV SYFGSARSDL 240
  241 GASFLMPAIT AVVLGGANIY GGSGSIIGTA IAVLLVGYLQ QGLQMAGVPN QVSSALSGAL 300
  301 LIVVVVGRSV SLHRQQIKEW LARRANNPLP