YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YDDQ_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLSEETSAV RPQKQTRFNG AKLVWMLKGS PLTVTSAVII VLMLLMMIFS PWLATHDPNA  60
   61 IDLTARLLPP SAAHWFGTDE VGRDLFSRVL VGSQQSILAG LVVVAIAGMI GSLLGCLSGV 120
  121 LGGRADAIIM RIMDIMLSIP SLVLTMALAA ALGPSLFNAM LAIAIVRIPF YVRLARGQAL 180
  181 VVRQYTYVQA AKTFGASRWH LINWHILRNS LPPLIVQASL DIGSAILMAA TLGFIGLGAQ 240
  241 QPSAEWGAMV ANGRNYVLDQ WWYCAFPGAA ILLTAVGFNL FGDGIRDLLD PKAGGKQS

Type	Start	End	Confidence
Cytoplasmic	1	31	0.87
Transmembrane Helix	32	53	0.87
Non-Cytoplasmic	54	96	0.94
Transmembrane Helix	97	121	0.90
Cytoplasmic	122	131	0.75
Transmembrane Helix	132	152	0.80
Non-Cytoplasmic	153	155	0.49
Transmembrane Helix	156	175	0.67
Cytoplasmic	176	217	0.61
Transmembrane Helix	218	239	0.89
Non-Cytoplasmic	240	260	0.72
Transmembrane Helix	261	282	0.91
Cytoplasmic	283	298	0.74