YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YDCI_ECOLI
Protein type:	Globular with Signal Peptide
Type Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKNSLFSQR IRLRHLHTFV AVAQQGTLGR AAETLNLSQP ALSKTLNELE QLTGARLFER  60
   61 GRQGAQLTLP GEQFLTHAVR VLDAINTAGR SLHRKEGLNN DVVRVGALPT AALGILPSVI 120
  121 GQFHQQQKET TLQVATMSNP MILAGLKTGE IDIGIGRMSD PELMTGLNYE LLFLESLKLV 180
  181 VRPNHPLLQE NVTLSRVLEW PVVVSPEGTA PRQHSDALVQ SQGCKIPSGC IETLSASLSR 240
  241 QLTVEYDYVW FVPSGAVKDD LRHATLVALP VPGHGAGEPI GILTRVDATF SSGCQLMINA 300
  301 IRKSMPF

Type	Start	End	Confidence
Signal Peptide	1	31	0.54
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	307	0.95