YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YCFZ_ECOLI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKFIILLSL LILLPLTAAS KPLIPIMKTL FTDVTGTVPD AEEIAHKAEL FRQQTGIAPF  60
   61 IVVLPDINNE ASLRQNGKAM LAHASSSLSD VKGSVLLLFT TREPRLIMIT NGQVESGLDD 120
  121 KHLGLLIENH TLAYLNADLW YQGINNALAV LQAQILKQST PPLTYYPHPG QQHENAPPGS 180
  181 TNTLGFIAWA ATFILFSRIF YYTTRFIYAL KFAVAMTIAN MGYQALCLYI DNSFAITRIS 240
  241 PLWAGLIGVC TFIAALLLTS KR

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	180	0.99
Transmembrane Helix	181	202	0.87
Cytoplasmic	203	207	0.87
Transmembrane Helix	208	228	0.91
Non-Cytoplasmic	229	238	0.75
Transmembrane Helix	239	259	0.93
Cytoplasmic	260	262	0.85