YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169888453, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.82
Transmembrane Helix	16	35	0.92
Non-Cytoplasmic	36	39	0.73
Transmembrane Helix	40	56	0.81
Cytoplasmic	57	63	0.75
Transmembrane Helix	64	84	0.81
Non-Cytoplasmic	85	88	0.60
Transmembrane Helix	89	108	0.83
Cytoplasmic	109	113	0.69
Transmembrane Helix	114	133	0.92
Non-Cytoplasmic	134	140	0.68
Transmembrane Helix	141	162	0.90
Cytoplasmic	163	388	0.94
Transmembrane Helix	389	408	0.91
Non-Cytoplasmic	409	414	0.71
Transmembrane Helix	415	433	0.86
Cytoplasmic	434	441	0.77
Transmembrane Helix	442	461	0.89
Non-Cytoplasmic	462	481	0.71
Transmembrane Helix	482	503	0.89
Cytoplasmic	504	512	0.69
Transmembrane Helix	513	532	0.93
Non-Cytoplasmic	533	717	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSPLLKRYT WNSAWLYYAR IFIALCGTTA FPWWLGDVKL TIPLTLGMVA AALTDLDDRL  60
   61 AGRLRNLIIT LFCFFIASAS VELLFPWPWL FAIGLTLSTS GFILLGGLGQ RYATIAFGAL 120
  121 LIAIYTMLGT SLYEHWYQQP MYLLAGAVWY NVLTLIGHLL FPVRPLQDNL ARCYEQLARY 180
  181 LELKSRMFDP DIEDQSQAPL YDLALANGLL MATLNQTKLS LLTRLRGDRG QRGTRRTLHY 240
  241 YFVAQDIHER ASSSHIQYQT LREHFRHSDV LFRFQRLMSM QGQACQQLSR CILLRQPYQH 300
  301 DPHFERAFTH IDAALERMRD NGAPADLLKT LGFLLNNLRA IDAQLATIES EQAQALPHNN 360
  361 DENELADDSP HGLSDIWLRL SRHFTPESAL FRHAVRMSLV LCFGYAIIQI TGMHHGYWIL 420
  421 LTSLFVCQPN YNATRHRLKL RIIGTLVGIA IGIPVLWFVP SLEGQLVLLV ITGVLFFAFR 480
  481 NVQYAHATMF ITLLVLLCFN LLGEGFEVAL PRVIDTLIGC AIAWAAVSYI WPDWQFRNLP 540
  541 RMLERATEAN CRYLDAILEQ YHQGRDNRLA YRIARRDAHN RDAELASVVS NMSSEPNVTP 600
  601 QIREAAFRLL CLNHTFTSYI SALGAHREQL TNPEILAFLD DAVCYVDDAL HHQPADEERV 660
  661 NEALASLKQR MQQLEPRADS KEPLVVQQVG LLIALLPEIG RLQRQITQVP QETPVSA