YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YCBC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFTLKKVIG NMLLPLPLML LIIGAGLALL WFSRFQKTGK IFISIGWLAL LLLSLQPVAD  60
   61 RLLRPIESTY PTWNNSQKVD YIVVLGGGYT WNPQWAPSSN LINNSLPRLN EGIRLWRENP 120
  121 GSKLIFTGGV AKTNTVSTAE VGARVAQSLG VPREQIITLD LPKDTEEEAA AVKQAIGDAP 180
  181 FLLVTSASHL PRAMIFFQQE GLNPLPAPAN QLAIDSPLNP WERAIPSPVW LMHSDRVGYE 240
  241 TLGRIWQWLK GSSGEPRQE

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.39
Transmembrane Helix	9	32	0.86
Cytoplasmic	33	38	0.35
Transmembrane Helix	39	59	0.82
Non-Cytoplasmic	60	259	0.51