YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YBIR_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.91
Transmembrane Helix	14	32	0.96
Non-Cytoplasmic	33	41	0.72
Transmembrane Helix	42	60	0.87
Cytoplasmic	61	80	0.75
Transmembrane Helix	81	102	0.89
Non-Cytoplasmic	103	158	0.77
Transmembrane Helix	159	182	0.90
Cytoplasmic	183	199	0.83
Transmembrane Helix	200	217	0.85
Non-Cytoplasmic	218	222	0.60
Transmembrane Helix	223	242	0.67
Cytoplasmic	243	245	0.50
Transmembrane Helix	246	268	0.77
Non-Cytoplasmic	269	310	0.52
Transmembrane Helix	311	335	0.88
Cytoplasmic	336	346	0.80
Transmembrane Helix	347	369	0.91
Non-Cytoplasmic	370	372	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPFLRTLQ GDRFFQLLIL VGIGLSFFVP FAPKSWPAAI DWHTIITLSG LMLLTKGVEL  60
   61 SGYFDVLGRK MVRRFATERR LAMFMVLAAA LLSTFLTNDV ALFIVVPLTI TLKRLCEIPV 120
  121 NRLIIFEALA VNAGSLLTPI GNPQNILIWG RSGLSFAGFI AQMAPLAGAM MLTLLLLCWC 180
  181 CFPGKAMQYH TGVQTPEWKP RLVWSCLGLY IVFLTALEFK QELWGLVIVA AGFALLARRV 240
  241 VLSVDWTLLL VFMAMFIDVH LLTQLPALQG VLGNVSHLSE PGLWLTAIGL SQVISNVPST 300
  301 ILLLNYVPPS LLLVWAVNVG GFGLLPGSLA NLIALRMAND RRIWWRFHLY SIPMLLWAAL 360
  361 VGYVLLVILP AN