YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YBDG_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDLISQVED LAGIEIDHTT SMVMIFGIIF LTAVVVHIIL HWVVLRTFEK RAIASSRLWL  60
   61 QIITQNKLFH RLAFTLQGII VNIQAVFWLQ KGTEAADILT TCAQLWIMMY ALLSVFSLLD 120
  121 VILNLAQKFP AASQLPLKGI FQGIKLIGAI LVGILMISLL IGQSPAILIS GLGAMAAVLM 180
  181 LVFKDPILGL VAGIQLSAND MLKLGDWLEM PKYGADGAVI DIGLTTVKVR NWDNTITTIP 240
  241 TWSLVSDSFK NWSGMSASGG RRIKRSISID VTSIRFLDED EMQRLNKAHL LKPYLTSRHQ 300
  301 EINEWNRQQG STESVLNLRR MTNIGTFRAY LNEYLRNHPR IRKDMTLMVR QLAPGDNGLP 360
  361 LEIYAFTNTV VWLEYESIQA DIFDHIFAIV EEFGLRLHQS PTGNDIRSLA GAFKQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.93
Transmembrane Helix	23	45	0.92
Cytoplasmic	46	67	0.91
Transmembrane Helix	68	88	0.93
Non-Cytoplasmic	89	104	0.82
Transmembrane Helix	105	125	0.91
Cytoplasmic	126	140	0.87
Transmembrane Helix	141	161	0.89
Non-Cytoplasmic	162	165	0.63
Transmembrane Helix	166	188	0.75
Cytoplasmic	189	415	0.89