YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ENTS_ECOLI, YBDA...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	42	0.92
Non-Cytoplasmic	43	53	0.78
Transmembrane Helix	54	76	0.91
Cytoplasmic	77	84	0.94
Transmembrane Helix	85	105	0.95
Non-Cytoplasmic	106	115	0.75
Transmembrane Helix	116	139	0.83
Cytoplasmic	140	151	0.82
Transmembrane Helix	152	172	0.91
Non-Cytoplasmic	173	178	0.70
Transmembrane Helix	179	199	0.92
Cytoplasmic	200	216	0.89
Transmembrane Helix	217	239	0.90
Non-Cytoplasmic	240	256	0.85
Transmembrane Helix	257	279	0.88
Cytoplasmic	280	287	0.82
Transmembrane Helix	288	307	0.91
Non-Cytoplasmic	308	311	0.65
Transmembrane Helix	312	336	0.83
Cytoplasmic	337	350	0.86
Transmembrane Helix	351	372	0.85
Non-Cytoplasmic	373	377	0.68
Transmembrane Helix	378	399	0.89
Cytoplasmic	400	416	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKQSWLLNL SLLKTHPAFR AVFLARFISI VSLGLLGVAV PVQIQMMTHS TWQVGLSVTL  60
   61 TGGAMFVGLM VGGVLADRYE RKKVILLARG TCGIGFIGLC LNALLPEPSL LAIYLLGLWD 120
  121 GFFASLGVTA LLAATPALVG RENLMQAGAI TMLTVRLGSV ISPMIGGLLL ATGGVAWNYG 180
  181 LAAAGTFITL LPLLSLPALP PPPQPREHPL KSLLAGFRFL LASPLVGGIA LLGGLLTMAS 240
  241 AVRVLYPALA DNWQMSAAQI GFLYAAIPLG AAIGALTSGK LAHSARPGLL MLLSTLGSFL 300
  301 AIGLFGLMPM WILGVVCLAL FGWLSAVSSL LQYTMLQTQT PEAMLGRING LWTAQNVTGD 360
  361 AIGAALLGGL GAMMTPVASA SASGFGLLII GVLLLLVLVE LRHFRQTPPQ VTASDS