YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YBBP_ECOLI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	31	0.97
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	242	0.99
Transmembrane Helix	243	267	0.88
Cytoplasmic	268	290	0.95
Transmembrane Helix	291	313	0.90
Non-Cytoplasmic	314	334	0.90
Transmembrane Helix	335	356	0.92
Cytoplasmic	357	375	0.92
Transmembrane Helix	376	398	0.89
Non-Cytoplasmic	399	404	0.73
Transmembrane Helix	405	429	0.89
Cytoplasmic	430	450	0.95
Transmembrane Helix	451	473	0.90
Non-Cytoplasmic	474	679	0.99
Transmembrane Helix	680	703	0.86
Cytoplasmic	704	725	0.93
Transmembrane Helix	726	747	0.89
Non-Cytoplasmic	748	768	0.84
Transmembrane Helix	769	790	0.95
Cytoplasmic	791	804	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIARWFWREW RSPSLLIVWL ALSLAVACVL ALGNISDRME KGLSQQSREF MAGDRALRSS  60
   61 REVPQAWLEE AQKRGLKVGK QLTFATMTFA GDTPQLANVK AVDDIYPMYG DLQTNPPGLK 120
  121 PQAGSVLLAP RLMALLNLKT GDTIDVGDAT LRIAGEVIQE PDSGFNPFQM APRLMMNLAD 180
  181 VDKTGAVQPG SRVTWRYKFG GNENQLDGYE KWLLPQLKPE QRWYGLEQDE GALGRSMERS 240
  241 QQFLLLSALL TLLLAVAAVA VAMNHYCRSR YDLVAILKTL GAGRAQLRKL IVGQWLMVLT 300
  301 LSAVTGGAIG LLFENVLMVL LKPVLPAALP PASLWPWLWA LGTMTVISLL VGLRPYRLLL 360
  361 ATQPLRVLRN DVVANVWPLK FYLPIVSVVV VLLLAGLMGG SMLLWAVLAG AVVLALLCGV 420
  421 LGWMLLNVLR RMTLKSLPLR LAVSRLLRQP WSTLSQLSAF SLSFMLLALL LVLRGDLLDR 480
  481 WQQQLPPESP NYFLINIATE QVAPLKAFLA EHQIVPESFY PVVRARLTAI NDKPTEGNED 540
  541 EALNRELNLT WQNTRPDHNP IVAGNWPPKA DEVSMEEGLA KRLNVALGDT VTFMGDTQEF 600
  601 RAKVTSLRKV DWESLRPNFY FIFPEGALDG QPQSWLTSFR WENGNGMLTQ LNRQFPTISL 660
  661 LDIGAILKQV GQVLEQVSRA LEVMVVLVTA CGMLLLLAQV QVGMRQRHQE LVVWRTLGAG 720
  721 KKLLRTTLWC EFAMLGFVSG LVAAIGAETA LAVLQAKVFD FPWEPDWRLW IVLPCSGALL 780
  781 LSLFGGWLGA RLVKGKALFR QFAG