YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YBBM_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSHNITNES LALALMLVVV AILISHKEKL ALEKDILWSV GRAIIQLIIV GYVLKYIFSV  60
   61 DDASLTLLMV LFICFNAAWN AQKRSKYIAK AFISSFIAIT VGAGITLAVL ILSGSIEFIP 120
  121 MQVIPIAGMI AGNAMVAVGL CYNNLGQRVI SEQQQIQEKL SLGATPKQAS AILIRDSIRA 180
  181 ALIPTVDSAK TVGLVSLPGM MSGLIFAGID PVKAIKYQIM VTFMLLSTAS LSTIIACYLT 240
  241 YRKFYNSRHQ LVVTQLKKK

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.91
Transmembrane Helix	6	26	0.84
Cytoplasmic	27	35	0.89
Transmembrane Helix	36	56	0.89
Non-Cytoplasmic	57	62	0.75
Transmembrane Helix	63	81	0.93
Cytoplasmic	82	90	0.88
Transmembrane Helix	91	112	0.93
Non-Cytoplasmic	113	122	0.71
Transmembrane Helix	123	143	0.93
Cytoplasmic	144	188	0.94
Transmembrane Helix	189	209	0.89
Non-Cytoplasmic	210	218	0.78
Transmembrane Helix	219	241	0.93
Cytoplasmic	242	259	0.96