YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YAHN_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQLVHLFMD EITMDPLHAV YLTVGLFVIT FFNPGANLFV VVQTSLASGR RAGVLTGLGV  60
   61 ALGDAFYSGL GLFGLATLIT QCEEIFSLIR IVGGAYLLWF AWCSMRRQST PQMSTLQQPI 120
  121 SAPWYVFFRR GLITDLSNPQ TVLFFISIFS VTLNAETPTW ARLMAWAGIV LASIIWRVFL 180
  181 SQAFSLPAVR RAYGRMQRVA SRVIGAIIGV FALRLIYEGV TQR

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.91
Transmembrane Helix	19	41	0.93
Cytoplasmic	42	53	0.81
Transmembrane Helix	54	76	0.90
Non-Cytoplasmic	77	85	0.73
Transmembrane Helix	86	105	0.92
Cytoplasmic	106	130	0.89
Transmembrane Helix	131	153	0.79
Non-Cytoplasmic	154	159	0.78
Transmembrane Helix	160	180	0.90
Cytoplasmic	181	198	0.89
Transmembrane Helix	199	217	0.95
Non-Cytoplasmic	218	223	0.80