YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GNGF_CLOAB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFIDWIKPG IKLKRWIMLG GMGVLFISFA LAELITKGSY YNVYYKAFYI FLIVVGAFIL  60
   61 YISLTQGMKS IISLINKGYL NVSLDSRKLG NLIYEKRLLV KGPKIVAIGG GTGLSTMLRG 120
  121 LKYYTSNITA VVTVADDGGG SGALREDLGI LPPGDIRNCI LALSDTEPLM EDLLQYRFKD 180
  181 GRLKNQSFGN LFLAAMDGIS TNFEEAVHKM SSVLAVTGKV LPVTLDNVVL KAKLKNGVVV 240
  241 EGESNIPEQA ILYESPIEKI FIEPENARAL HETVQAIKEA DAVILGPGSL FTSVIPNLLV 300
  301 KDIGNALLKT KALKLYVSNI MTQPGETDNF SVSDHVNAIT KHVGGKVVDY TLVNNGTVSE 360
  361 KLKKKYFEKT SELVKIDKNE LDKIGVGIVE GNFIKIKDGF VRHDSDEIAK ILVETIMDKK 420
  421 LFYDRKKIIE YFYLSQRLKE NRKLEKENRG N

Type	Start	End	Confidence
Cytoplasmic	1	15	0.92
Transmembrane Helix	16	36	0.94
Non-Cytoplasmic	37	44	0.82
Transmembrane Helix	45	65	0.92
Cytoplasmic	66	451	0.67