YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|225371029, gi...
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYIIFSSIF AGFILGFLVR VFLGRLSLLD LEKNLKKVRV ESQLEIENER RQIIANAKSQ  60
   61 MLKEKNQQDR DIRDRKNEIV NLEKRLLQRE ETLDKRISAL DKQQSRVDFK IKEFEQKEKV 120
  121 IREKEADLVK RLENISGLTR EDARKIVIEK VEHESKRDAQ VIINKSEQEA QLLADKVAKD 180
  181 ILVSTMQRIV TEVSSEFTVA SVELPNDEMK GRIIGKEGRN IRALETLIGA DIIIDDTPEA 240
  241 VVISCFDPIR KELAKRTLER LVTDGRIHPA RIEEVVYNVT NEINSIIQEE GEKVVFDLNI 300
  301 HGLDKRLIRG LGRLYFRSSY GQNVLSHSKE TAIIGEILAK EMKLDPVVVK RACLLHDIGK 360
  361 GMESISDNSE GHAITGAELA QSCGESEIVV NAIAAHHNEV KPESLEAIVV QIADAISASR 420
  421 PGARRESLNN YINRLKRLED IAYSFEGVQK CYAIQAGREV RIIVDNALIN DEKSILLARD 480
  481 IAKKIEAEMR YPGKIKVTII RETRVIEYAR

Type	Start	End	Confidence
Cytoplasmic	1	4	0.47
Transmembrane Helix	5	24	0.66
Non-Cytoplasmic	25	510	0.83