YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	XAPB_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	32	0.90
Non-Cytoplasmic	33	42	0.71
Transmembrane Helix	43	62	0.93
Cytoplasmic	63	71	0.80
Transmembrane Helix	72	89	0.96
Non-Cytoplasmic	90	95	0.82
Transmembrane Helix	96	118	0.85
Cytoplasmic	119	131	0.78
Transmembrane Helix	132	152	0.90
Non-Cytoplasmic	153	159	0.72
Transmembrane Helix	160	179	0.92
Cytoplasmic	180	210	0.89
Transmembrane Helix	211	231	0.90
Non-Cytoplasmic	232	251	0.89
Transmembrane Helix	252	273	0.89
Cytoplasmic	274	281	0.66
Transmembrane Helix	282	300	0.92
Non-Cytoplasmic	301	306	0.81
Transmembrane Helix	307	327	0.93
Cytoplasmic	328	346	0.84
Transmembrane Helix	347	369	0.88
Non-Cytoplasmic	370	381	0.88
Transmembrane Helix	382	402	0.94
Cytoplasmic	403	418	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIAMRLKVM SFLQYFIWGS WLVTLGSYMI NTLHFTGANV GMVYSSKGIA AIIMPGIMGI  60
   61 IADKWLRAER AYMLCHLVCA GVLFYAASVT DPDMMFWVML VNAMAFMPTI ALSNSVSYSC 120
  121 LAQAGLDPVT AFPPIRVFGT VGFIVAMWAV SLLHLELSSL QLYIASGASL LLSAYALTLP 180
  181 KIPVAEKKAT TSLASKLGLD AFVLFKNPRM AIFFLFAMML GAVLQITNVF GNPFLHDFAR 240
  241 NPEFADSFVV KYPSILLSVS QMAEVGFILT IPFFLKRFGI KTVMLMSMVA WTLRFGFFAY 300
  301 GDPSTTGFIL LLLSMIVYGC AFDFFNISGS VFVEQEVDSS IRASAQGLFM TMVNGVGAWV 360
  361 GSILSGMAVD YFSVDGVKDW QTIWLVFAGY ALFLAVIFFF GFKYNHDPEK IKHRAVTH