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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|603524
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.84
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELGPLRVLT VLLCLAPVFA GLFISMDQPT LSIQKSVLTI TTNDTLNITC SGQRAVYWSW  60
   61 PNNQSSVEKR LAVTGCSEGP FCKTLTLLRV IGNDTGDYRC LYGDSQAATT IYVYVQDYRS 120
  121 PFVTSVGDQL GIVYITKNKT VVVPCLGTVS NLNVSLHAKY PEKVFVPDGK SISWDNKKGF 180
  181 TIPSHLINYA GMVFCEAKID NESYQSVIYI VAVVGYRIYD LTMNPHYQVE LAVGEKLVLN 240
  241 CTVRTELNVG IDFRWDYPSI KERRATIRDL KTTAGEIKTF VSTLTIESVN LSDKGRYTCA 300
  301 ASSGRMNMKN SSYFIIHESP FIHLEKMENV VEMKLGDTVS IPVKFKGYPP PEAKWYKNGK 360
  361 VINANHTVKL GYALVITEAT EKDAGNYTVV LTNPTNKMQK RHTFTLLVNV PPQIGENALM 420
  421 APVDSYKYGS TQALTCTIYA VPPPAAVLWY WQLEEECTFS PQKVRLGANP YACRKWKVIS 480
  481 ERKGGNQVEI KQRVVTIAGK TKTVSTLVIQ AANVSALYRC MATNRAGSSE RVISFHVTRG 540
  541 LEINLQPRSQ LTEKDNTSLQ CTADKFTFEK LSWYKLSTHV SQTPFGGLPM PVCKNLDALQ 600
  601 KLNATVSNVN GENVTLELIL RNISLQDGGD YVCIAQDKKA KTQHCLVKHL TVQEPLHPRL 660
  661 VGNLENQTTN IGETIEVLCT VNGVPPPNIT WFKNSETLFE DSGIVLKDGN KTLTIRRVRK 720
  721 EDGGLYTCLA CNILGCKKAE AFFSVQGAEE KTNLELIILV GTAVIAMFFW LLLVIILRTV 780
  781 KRANGGDMKT GYLSIIMDPD EVPIDEHCER LPYDASKWEF PRDRLKLGKP LGRGAFGQVI 840
  841 EADAFGIDKT ATCRTVAVKM LKEGATHSEH RALMSELKIL IHIGHHLNVV NLLGACTKPG 900
  901 GPLMVIVEYC KFGNLSAYLR SKRSEFIPYK MKSARFRQGK ENYTGDISTD LKQRLDSITS 960
  961 SQSSTSSGFV EERSLSDVEE EDAGSEDLCK NPLTMEDLIC YSFQVARGME FLASRKCIHR1020
 1021 DLAARNILLS DNNVVKICDF GLARDIYKDP DYVRKGDARL PLKWMAPETI FDRVYTIQSD1080
 1081 VWSFGVLLWE IFSLGASPYP GVKIDEEFCR RLKEGTRMRA PDYTTPEMYQ TMLDCWHGDP1140
 1141 KQRPTFSELV EHLGNLLQAN VRQDGKDYVV LPLSVSLNME EDSGLSLPTS PASCKEEEEV1200
 1201 CDPKFHYDNT AGISQYRQGS KRKSRPVSVK TFEDIPLVTT VKVVQEENQT DSGMVLASEE1260
 1261 LKTLEEQDKQ VKIPFSTLAP SKSNESVMSE ASNQTSGYQS GYHSDDMDNM VCSSEDTELL1320
 1321 CAQEASPTLP RCAWPGIYSP APVASLPL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle