YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UHPC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.99
Transmembrane Helix	26	46	0.84
Non-Cytoplasmic	47	66	0.77
Transmembrane Helix	67	86	0.85
Cytoplasmic	87	95	0.82
Transmembrane Helix	96	115	0.93
Non-Cytoplasmic	116	120	0.61
Transmembrane Helix	121	145	0.82
Cytoplasmic	146	155	0.86
Transmembrane Helix	156	178	0.90
Non-Cytoplasmic	179	184	0.72
Transmembrane Helix	185	205	0.92
Cytoplasmic	206	246	0.97
Transmembrane Helix	247	269	0.90
Non-Cytoplasmic	270	286	0.93
Transmembrane Helix	287	309	0.90
Cytoplasmic	310	320	0.84
Transmembrane Helix	321	341	0.91
Non-Cytoplasmic	342	347	0.70
Transmembrane Helix	348	369	0.89
Cytoplasmic	370	377	0.87
Transmembrane Helix	378	400	0.90
Non-Cytoplasmic	401	408	0.83
Transmembrane Helix	409	431	0.92
Cytoplasmic	432	439	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPFLKAPAD APLMTDKYEI DARYRYWRRH ILLTIWLGYA LFYFTRKSFN AAVPEILANG  60
   61 VLSRSDIGLL ATLFYITYGV SKFVSGIVSD RSNARYFMGI GLIATGIINI LFGFSTSLWA 120
  121 FAVLWVLNAF FQGWGSPVCA RLLTAWYSRT ERGGWWALWN TAHNVGGALI PIVMAAAALH 180
  181 YGWRAGMMIA GCMAIVVGIF LCWRLRDRPQ ALGLPAVGEW RHDALEIAQQ QEGAGLTRKE 240
  241 ILTKYVLLNP YIWLLSFCYV LVYVVRAAIN DWGNLYMSET LGVDLVTANT AVTMFELGGF 300
  301 IGALVAGWGS DKLFNGNRGP MNLIFAAGIL LSVGSLWLMP FASYVMQATC FFTIGFFVFG 360
  361 PQMLIGMAAA ECSHKEAAGA ATGFVGLFAY LGASLAGWPL AKVLDTWHWS GFFVVISIAA 420
  421 GISALLLLPF LNAQTPREA