YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TIE2_DANRE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCLLDSCTAL LLLGCWMSGS AVRISDVTLV NPDPVVSPLT APSLLCVSSD WSSGGSVLAL  60
   61 GQEFPRPQGS VLALGQEFPH TEPRPHPAAA TVTWSSRSHA FGAFYCQIRN STGRKIYTYK 120
  121 MLQEAAFLPE SLTITVNQGE NINISYSRRL YSPEDTVIHK NGHFEHSSPK EDISDIIHYP 180
  181 VTNAKAESHA GIYAIRYISA APSSAAITRL IVRSCRAGFW GPNCTESCPR CANGGVCDDT 240
  241 TGECVCPPGF RGHTCDIVCG EGRFGAGCKE RCVDGVCRAL VFCLRDPYGC SCASGWRGLS 300
  301 CNDACPDGYY GAGCTQKCVC AKGRCDRFRG CVCAGRHGSR CEEADSSPVI SHLRDVEINT 360
  361 GVELSVNCSA SGRPAPLHGD ITLITANRTT IAAVDTHTLN DQSTSVFRVQ QVRVSSAGRW 420
  421 RCQVNNTHMQ VEDEFTVEVK VPPRPQNPPV LQGSGPRHLL LLLNTEPYSG DGPIATTTLL 480
  481 YRPASAHTWS SVTAHGPLVR LDNLYPMTQY LTQVQLSRPG PGGAGQAGPA ATFSTQVLEL 540
  541 PVGVKLSAVS QTALLLSWDI APAEQHCTYE VSCLQAGAPG TLRTFQLPSN SSAMHLSDLK 600
  601 PRHKYQCTVR SSCGVGQNHP SASAWTLSDQ LPPPPANISI WNISDTSAVL TWAVAEGESV 660
  661 SRAVIRFQQV EQAQYRQQVE LPVQTQQLHM RFQLLGLRPN TGYQLQLWTV NNMGESAESP 720
  721 PVSLMTLPQQ ESSALFAAHG HLLLYAILGS AGMTCCTVLL AFCIVLQLKR NTLQRRIHSI 780
  781 LREEPAVHFS SAPPPHRRSA VVSRSLVFPA LQWSDIQFQD VLGEGNFGQV LKARIRKDGL 840
  841 RMDAAVKRMK DYASQDDHRD FAGELEVLCR LGPHKNIIHL LGACEHRGYL YLAIEFAPHG 900
  901 NLLDFLRKSR VLETDPAFAI AHRTASTLSS QQLLAFSADV ARGMSYLSQK QFIHRDLAAR 960
  961 NVLVGENFVA KIADFGLSRG QEVYVKKTMG RLPVRWMAIE SLNYSVYTTN SDVWSYGVLL1020
 1021 WEVVSLGGTP YCGMTCAELY EKLPLGFRLE KPLNCDDEVY ELMQQCWREK PFERPSFSQI1080
 1081 LLSLGRMLEE RKTYVNTTLY EKFTYAGIDC SAEEAG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle