YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TATC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVEDTQPLI THLIELRKRL LNCIIAVIVI FLCLVYFAND IYHLVSAPLI KQLPQGSTMI  60
   61 ATDVASPFFT PIKLTFMVSL ILSAPVILYQ VWAFIAPALY KHERRLVVPL LVSSSLLFYI 120
  121 GMAFAYFVVF PLAFGFLANT APEGVQVSTD IASYLSFVMA LFMAFGVSFE VPVAIVLLCW 180
  181 MGITSPEDLR KKRPYVLVGA FVVGMLLTPP DVFSQTLLAI PMYCLFEIGV FFSRFYVGKG 240
  241 RNREEENDAE AESEKTEE

Type	Start	End	Confidence
Cytoplasmic	1	19	0.98
Transmembrane Helix	20	39	0.95
Non-Cytoplasmic	40	73	0.93
Transmembrane Helix	74	96	0.89
Cytoplasmic	97	106	0.89
Transmembrane Helix	107	130	0.81
Non-Cytoplasmic	131	157	0.81
Transmembrane Helix	158	183	0.88
Cytoplasmic	184	193	0.89
Transmembrane Helix	194	210	0.95
Non-Cytoplasmic	211	216	0.70
Transmembrane Helix	217	237	0.87
Cytoplasmic	238	258	0.93