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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|549003, gi|15...
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQPTLIRPR LRHRRSTPAA ATKMCPKRHW LVNNRAAGSR GSGGAAARSR RSLDQIVEVL  60
   61 VALIVVNCLA TAAAALITPP DSLESLGSLG IPSSSASSSE DDDDMSSGFY RIPHRLEGYP 120
  121 QLQQLQRGQN FKISPKPCSF GRVEGTCMFV WECIKSEGKH VGMCVDSFMF GSCCTHNYTD 180
  181 NIVLPQTAFS YTRPTKPLTL RPRPPAAPYK PMISGMTTIE RPHGAGTLVI RPSGPHHQGT 240
  241 LARPHPPPYQ SKPTTASDLH GSASHPSSSS SSSSSSNPNS IWHTSTQQQQ QQHQQNQQNH 300
  301 WQMTTEPSFI TKPRPTGWTK PGIVNLPMPA RPSKPSKPTK KPIVYDRSPP PPSSVPPSTS 360
  361 TSTTSTSLIW PAQTHPPQPH RPTRPQLSPG TSLAASSSSH WPSSTTSTTS STTSTTTTTT 420
  421 TTRRTTTPTT TTRRTTTNKP TRPYQRPTTA TSSSSTSTTS SKTPTTTRPI SSSSSSSSGI 480
  481 VTSSQRPTQP THRTPVLATS GIETNEISDS SIPDAGALGR VKTISAARSE CGVPTLARPE 540
  541 TRIVGGKSAA FGRWPWQVSV RRTSFFGFSS THRCGGALIN ENWIATAGHC VDDLLISQIR 600
  601 IRVGEYDFSH VQEQLPYIER GVAKKVVHPK YSFLTYEYDL ALVKLEQPLE FAPHVSPICL 660
  661 PETDSLLIGM NATVTGWGRL SEGGTLPSVL QEVSVPIVSN DNCKSMFMRA GRQEFIPDIF 720
  721 LCAGYETGGQ DSCQGDSGGP LQAKSQDGRF FLAGIISWGI GCAEANLPGV CTRISKFTPW 780
  781 ILEHVR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle