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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SLIT2_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.97
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGIGWQTLS LSLALVLSIL NKVAPHACPA QCSCSGSTVD CHGLALRIVP RNIPRNTERL  60
   61 DLNGNNITRI TKTDFAGLRH LRILQLMENK ISTIERGAFH DLKELERLRL NRNNLQLFPE 120
  121 LLFLGTAKLY RLDLSENQIQ AIPRKAFRGA VDIKNLQLDY NQISCIEDGA FRALRDLEVL 180
  181 TLNNNNITRL SVASFNHMPK LRTFRLHSNN LYCDCHLAWL SDWLRQRPRV GLYTQCMGPS 240
  241 HLRGHNVAEV QKREFVCSDE EEGHQSFMAP SCSVLHCPIA CTCSNNIVDC RGKGLTEIPT 300
  301 NLPETITEIR LEQNSIRVIP PGAFSPYKKL RRLDLSNNQI SELAPDAFQG LRSLNSLVLY 360
  361 GNKITELPKS LFEGLFSLQL LLLNANKINC LRVDAFQDLH NLNLLSLYDN KLQTVAKGTF 420
  421 SALRAIQTMH LAQNPFICDC HLKWLADYLH TNPIETSGAR CTSPRRLANK RIGQIKSKKF 480
  481 RCSGTEDYRS KLSGDCFADL ACPEKCRCEG TTVDCSNQKL NKIPDHIPQY TAELRLNNNE 540
  541 FTVLEATGIF KKLPQLRKIN LSNNKITDIE EGAFEGASGV NEILLTSNRL ENVQHKMFKG 600
  601 LESLKTLMLR SNRISCVGND SFTGLGSVRL LSLYDNQITT VAPGAFGTLH SLSTLNLLAN 660
  661 PFNCNCHLAW LGEWLRRKRI VTGNPRCQKP YFLKEIPIQD VAIQDFTCDD GNDDNSCSPL 720
  721 SRCPSECTCL DTVVRCSNKG LKVLPKGIPR DVTELYLDGN QFTLVP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle