YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC5A4_PIG
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.85
Transmembrane Helix	26	48	0.87
Cytoplasmic	49	64	0.81
Transmembrane Helix	65	87	0.80
Non-Cytoplasmic	88	102	0.57
Transmembrane Helix	103	121	0.91
Cytoplasmic	122	140	0.85
Transmembrane Helix	141	160	0.91
Non-Cytoplasmic	161	176	0.70
Transmembrane Helix	177	198	0.88
Cytoplasmic	199	207	0.65
Transmembrane Helix	208	227	0.91
Non-Cytoplasmic	228	273	0.95
Transmembrane Helix	274	293	0.92
Cytoplasmic	294	311	0.84
Transmembrane Helix	312	330	0.90
Non-Cytoplasmic	331	380	0.92
Transmembrane Helix	381	403	0.89
Cytoplasmic	404	422	0.89
Transmembrane Helix	423	444	0.93
Non-Cytoplasmic	445	454	0.82
Transmembrane Helix	455	477	0.88
Cytoplasmic	478	484	0.88
Transmembrane Helix	485	506	0.90
Non-Cytoplasmic	507	525	0.89
Transmembrane Helix	526	548	0.92
Cytoplasmic	549	635	0.99
Transmembrane Helix	636	658	0.89
Non-Cytoplasmic	659	660	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTLSPSTV TKTPGPPEIS ERIQNAADIS VIVIYFVVVM AVGLWAMLRT NRGTVGGFFL  60
   61 AGRDVTWWPM GASLFASNIG SGHFVGLAGT GAASGIAIAA FEWNALLLLL VLGWFFVPIY 120
  121 IKAGVMTMPE YLRKRFGGKR LQIYLSILSL FICVALRISS DIFSGAIFIK LALGLDLYLA 180
  181 IFSLLAITAI YTITGGLASV IYTDTLQTII MLIGSFILMG FAFVEVGGYE SFTEKYMNAI 240
  241 PTIVEGDNLT ISPKCYTPQG DSFHIFRDAV TGDIPWPGMI FGMTVVAAWY WCTDQVIVQR 300
  301 CLSGKDMSHV KAACIMCGYL KLLPMFLMVM PGMISRILYT EKVACVVPSE CVKHCGTEVG 360
  361 CSNYAYPLLV MELMPSGLRG LMLSVMLASL MSSLTSIFNS ASTLFTMDLY TKIRKQASEK 420
  421 ELLIAGRLFI ILLIVISIVW VPLVQVAQNG QLFHYIESIS SYLGPPIAAV FLLAIFCKRV 480
  481 NEQGAFWGLI IGFVMGLIRM IAEFVYGTGS CLAASNCPQI ICGVHYLYFA LILFFVSILV 540
  541 VLAISLLTKP IPDVHLYRLC WALRNSTEER IDLDAEEKRH EEAHDGVDED NPEETRGCLR 600
  601 KAYDLFCGLQ RKGPKLSKEE EEAQKRKLTD TSEKPLWKTI VNINAILLLA VAVFVHGYFA 660
  661