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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SKN1_CANAX
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERDLTYNAP KIKFTDTEGQ EEHFYFNRSN NSTNDLTSHD SSSTQLQDAN SRRQAPPPPP  60
   61 HNPFSDNSHE NSTESLYQSE TRFHQPLLHN DSNNSNSSIG NNRQRIPSQQ HDTSSLYSAS 120
  121 PISTSPLVSN FQSYSDNQDE MTRGKYNQNT NRSSSNYIQH SPTSAGYDRY PLKTQSSIGG 180
  181 SMSRIGLSSS SPSQQQQQHM YDNNSSNRSS YSPDSATDLM VYENGEFSPF GGYPASLFPL 240
  241 SIDEKEPDDY LHNPDPVQDA EYDKNRFLYD LKTMDKKSMN GLIAFIVMFL IAIAIFIILP 300
  301 VFTYTGYNPK AKNFENYEVL TRYSYPRLSA IRTSLIDPDT PEDALFWKSK NGEEWPLVFS 360
  361 DEFNAEGRTF YEGDDQFFTA PDLHYDATKD LEWYDPDAVT TANGTLTLRM DAFKNHGLFY 420
  421 RSGMIQSWNQ MCFTQGKLEF SAKLPGYGNI TGFWPGLWSM GNLGRPGYLA STEGVWPYTY 480
  481 DSCDAGITPN QSSPDGISYL PGQRLNKCTC PGEAHPNRGV GRGAPEIDAL EGEIHGVIGR 540
  541 VSQSLQVAPY DIWYMPNYDF LEIHNSSITL MNTYAGGPFQ QAISGVTMLN VTWYEYGDHQ 600
  601 HNFQKYGYEY LNDDESGYLR WFVGDNPTFT IYSQALHPNG NVGWRKLPKE PLSLILNFGI 660
  661 SNNWAYIDWP SLVFPSTMRV DYVRVYQPKD QINVGCDPTD FPTYDYIQQH LNVYQNVNLT 720
  721 KFEDGGYTFP KHKLIGC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle