YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SETC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.95
Transmembrane Helix	11	32	0.87
Non-Cytoplasmic	33	49	0.81
Transmembrane Helix	50	71	0.93
Cytoplasmic	72	81	0.90
Transmembrane Helix	82	100	0.98
Non-Cytoplasmic	101	105	0.83
Transmembrane Helix	106	128	0.90
Cytoplasmic	129	143	0.88
Transmembrane Helix	144	163	0.88
Non-Cytoplasmic	164	172	0.75
Transmembrane Helix	173	193	0.93
Cytoplasmic	194	220	0.92
Transmembrane Helix	221	240	0.92
Non-Cytoplasmic	241	257	0.77
Transmembrane Helix	258	276	0.96
Cytoplasmic	277	283	0.88
Transmembrane Helix	284	305	0.93
Non-Cytoplasmic	306	311	0.83
Transmembrane Helix	312	331	0.94
Cytoplasmic	332	343	0.77
Transmembrane Helix	344	365	0.81
Non-Cytoplasmic	366	370	0.77
Transmembrane Helix	371	391	0.94
Cytoplasmic	392	394	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKTATTPSK ILDLTAAAFL LVAFLTGIAG ALQTPTLSIF LADELKARPI MVGFFFTGSA  60
   61 IMGILVSQFL ARHSDKQGDR KLLILLCCLF GVLACTLFAW NRNYFILLST GVLLSSFAST 120
  121 ANPQMFALAR EHADRTGRET VMFSTFLRAQ ISLAWVIGPP LAYELAMGFS FKVMYLTAAI 180
  181 AFVVCGLIVW LFLPSIQRNI PVVTQPVEIL PSTHRKRDTR LLFVVCSMMW AANNLYMINM 240
  241 PLFIIDELHL TDKLTGEMIG IAAGLEIPMM LIAGYYMKRI GKRLLMLIAI VSGMCFYASV 300
  301 LMATTPAVEL ELQILNAIFL GILCGIGMLY FQDLMPEKIG SATTLYANTS RVGWIIAGSV 360
  361 DGIMVEIWSY HALFWLAIGM LGIAMICLLF IKDI